Detailed information of SNP:
|
SNP ID:
sf0405828337(Gbrowse)
Chromosome: chr04 Position: 5828337 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 53.44% | 46.56% |
| All Indica | 792 | 79.92% | 20.08% |
| All Japonica | 494 | 5.47% | 94.53% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 72.51% | 27.49% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 208 | 82.21% | 17.79% |
| Temperate Japonica | 332 | 3.01% | 96.99% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405828337 | A->G | LOC_Os04g10730(LOC_Os04g10730.1) | Non-Synonymous SNP |