Detailed information of SNP:
|
SNP ID:
sf0405830718(Gbrowse)
Chromosome: chr04 Position: 5830718 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.99% | 44.01% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405830718 | A->G | LOC_Os04g10740(LOC_Os04g10740.1) | Non-Synonymous SNP |