Detailed information of SNP:
|
SNP ID:
sf0405831223(Gbrowse)
Chromosome: chr04 Position: 5831223 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 56.48% | 43.52% |
| All Indica | 794 | 90.30% | 9.70% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 207 | 85.99% | 14.01% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405831223 | A->G | LOC_Os04g10740(LOC_Os04g10740.1) | Non-Synonymous SNP |