Detailed information of SNP:
|
SNP ID:
sf0405834727(Gbrowse)
Chromosome: chr04 Position: 5834727 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 53.99% | 46.01% |
| All Indica | 797 | 22.71% | 77.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 17.07% | 82.93% |
| Indica II | 212 | 19.34% | 80.66% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405834727 | A->T | LOC_Os04g10740(LOC_Os04g10740.1) | Non-Synonymous SNP |