Detailed information of SNP:
|
SNP ID:
sf0405852268(Gbrowse)
Chromosome: chr04 Position: 5852268 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 57.22% | 42.78% |
| All Indica | 788 | 37.94% | 62.06% |
| All Japonica | 495 | 82.42% | 17.58% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 33.24% | 66.76% |
| Indica II | 207 | 36.71% | 63.29% |
| Indica Intermediate | 208 | 47.60% | 52.40% |
| Temperate Japonica | 334 | 75.45% | 24.55% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405852268 | C->T | INTERGENIC | None |