Detailed information of SNP:
|
SNP ID:
sf0405852308(Gbrowse)
Chromosome: chr04 Position: 5852308 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 54.56% | 45.44% |
| All Indica | 796 | 36.31% | 63.69% |
| All Japonica | 494 | 79.55% | 20.45% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 34.05% | 65.95% |
| Indica II | 212 | 29.72% | 70.28% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 333 | 70.57% | 29.43% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405852308 | T->C | INTERGENIC | None |