Detailed information of SNP:
|
SNP ID:
sf0405860793(Gbrowse)
Chromosome: chr04 Position: 5860793 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 78.20% | 21.80% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 492 | 41.87% | 58.13% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 44.91% | 55.09% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 64 | 12.50% | 87.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405860793 | G->C | LOC_Os04g10800(LOC_Os04g10800.1) | Synonymous |