Detailed information of SNP:
|
SNP ID:
sf0405868605(Gbrowse)
Chromosome: chr04 Position: 5868605 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 92.69% | 7.31% |
| All Indica | 765 | 87.84% | 12.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 361 | 89.20% | 10.80% |
| Indica II | 203 | 86.21% | 13.79% |
| Indica Intermediate | 201 | 87.06% | 12.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405868605 | C->T | INTERGENIC | None |