Detailed information of SNP:
|
SNP ID:
sf0405871547(Gbrowse)
Chromosome: chr04 Position: 5871547 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 73.16% | 26.84% |
| All Indica | 794 | 93.20% | 6.80% |
| All Japonica | 497 | 40.24% | 59.76% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405871547 | G->A | LOC_Os04g10830(LOC_Os04g10830.1) | Non-Synonymous SNP |