Detailed information of SNP:
|
SNP ID:
sf0405879305(Gbrowse)
Chromosome: chr04 Position: 5879305 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 66.19% | 33.81% |
| All Indica | 790 | 93.04% | 6.96% |
| All Japonica | 485 | 19.79% | 80.21% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 327 | 15.29% | 84.71% |
| Tropical Japonica | 91 | 38.46% | 61.54% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405879305 | G->A | LOC_Os04g10850(LOC_Os04g10850.1) | Synonymous |