Detailed information of SNP:
|
SNP ID:
sf0405887681(Gbrowse)
Chromosome: chr04 Position: 5887681 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 54.88% | 45.12% |
| All Indica | 749 | 33.91% | 66.09% |
| All Japonica | 493 | 90.06% | 9.94% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 352 | 29.55% | 70.45% |
| Indica II | 202 | 41.09% | 58.91% |
| Indica Intermediate | 195 | 34.36% | 65.64% |
| Temperate Japonica | 332 | 92.47% | 7.53% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405887681 | A->G | LOC_Os04g10860(LOC_Os04g10860.1) | INTRON |