Detailed information of SNP:
|
SNP ID:
sf0405887802(Gbrowse)
Chromosome: chr04 Position: 5887802 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 84.06% | 15.94% |
| All Indica | 761 | 77.00% | 23.00% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 360 | 85.28% | 14.72% |
| Indica II | 204 | 65.69% | 34.31% |
| Indica Intermediate | 197 | 73.60% | 26.40% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405887802 | C->T | LOC_Os04g10860(LOC_Os04g10860.1) | Non-Synonymous SNP |