Detailed information of SNP:
|
SNP ID:
sf0405887905(Gbrowse)
Chromosome: chr04 Position: 5887905 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 55.44% | 44.56% |
| All Indica | 778 | 80.33% | 19.67% |
| All Japonica | 489 | 12.68% | 87.32% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 362 | 84.53% | 15.47% |
| Indica II | 209 | 73.21% | 26.79% |
| Indica Intermediate | 207 | 80.19% | 19.81% |
| Temperate Japonica | 329 | 7.90% | 92.10% |
| Tropical Japonica | 92 | 29.35% | 70.65% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405887905 | T->A | LOC_Os04g10860(LOC_Os04g10860.1) | Non-Synonymous SNP |