Detailed information of SNP:
|
SNP ID:
sf0405890042(Gbrowse)
Chromosome: chr04 Position: 5890042 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 57.21% | 42.79% |
| All Indica | 774 | 37.34% | 62.66% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 367 | 26.16% | 73.84% |
| Indica II | 201 | 59.20% | 40.80% |
| Indica Intermediate | 206 | 35.92% | 64.08% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405890042 | A->G | LOC_Os04g10870(LOC_Os04g10870.1) | Synonymous |