Detailed information of SNP:
|
SNP ID:
sf0405892208(Gbrowse)
Chromosome: chr04 Position: 5892208 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 58.13% | 41.87% |
| All Indica | 730 | 35.48% | 64.52% |
| All Japonica | 490 | 96.33% | 3.67% |
| Aus | 65 | 29.23% | 70.77% |
| Indica I | 335 | 31.64% | 68.36% |
| Indica II | 201 | 38.81% | 61.19% |
| Indica Intermediate | 194 | 38.66% | 61.34% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405892208 | C->T | INTERGENIC | None |