Detailed information of SNP:
|
SNP ID:
sf0405893553(Gbrowse)
Chromosome: chr04 Position: 5893553 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 59.97% | 40.03% |
| All Indica | 780 | 84.49% | 15.51% |
| All Japonica | 484 | 16.53% | 83.47% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 366 | 86.07% | 13.93% |
| Indica II | 206 | 80.58% | 19.42% |
| Indica Intermediate | 208 | 85.58% | 14.42% |
| Temperate Japonica | 326 | 11.96% | 88.04% |
| Tropical Japonica | 91 | 32.97% | 67.03% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405893553 | A->G | INTERGENIC | None |