Detailed information of SNP:
|
SNP ID:
sf0405894179(Gbrowse)
Chromosome: chr04 Position: 5894179 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 58.44% | 41.56% |
| All Indica | 781 | 79.64% | 20.36% |
| All Japonica | 492 | 20.33% | 79.67% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 364 | 78.57% | 21.43% |
| Indica II | 210 | 80.48% | 19.52% |
| Indica Intermediate | 207 | 80.68% | 19.32% |
| Temperate Japonica | 330 | 16.67% | 83.33% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405894179 | C->T | INTERGENIC | None |