Detailed information of SNP:
|
SNP ID:
sf0405895685(Gbrowse)
Chromosome: chr04 Position: 5895685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1226 | 78.55% | 21.45% |
| All Indica | 642 | 70.25% | 29.75% |
| All Japonica | 482 | 95.44% | 4.56% |
| Aus | 61 | 39.34% | 60.66% |
| Indica I | 288 | 74.65% | 25.35% |
| Indica II | 179 | 64.25% | 35.75% |
| Indica Intermediate | 175 | 69.14% | 30.86% |
| Temperate Japonica | 327 | 97.86% | 2.14% |
| Tropical Japonica | 88 | 87.50% | 12.50% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 4 | 50.00% | 50.00% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405895685 | C->T | LOC_Os04g10880(LOC_Os04g10880.1) | Synonymous |