Detailed information of SNP:
|
SNP ID:
sf0405908943(Gbrowse)
Chromosome: chr04 Position: 5908943 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.63% | 9.37% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405908943 | C->T | LOC_Os04g10910(LOC_Os04g10910.1) | INTRON |