Detailed information of SNP:
|
SNP ID:
sf0405913968(Gbrowse)
Chromosome: chr04 Position: 5913968 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.02% | 30.98% |
| All Indica | 798 | 45.99% | 54.01% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 20.53% | 79.47% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405913968 | C->A | INTERGENIC | None |