Detailed information of SNP:
|
SNP ID:
sf0405969358(Gbrowse)
Chromosome: chr04 Position: 5969358 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 51.35% | 48.65% |
| All Indica | 796 | 51.38% | 48.62% |
| All Japonica | 495 | 59.19% | 40.81% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 210 | 24.76% | 75.24% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 334 | 55.99% | 44.01% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405969358 | A->G | INTERGENIC | None |