Detailed information of SNP:
|
SNP ID:
sf0405970260(Gbrowse)
Chromosome: chr04 Position: 5970260 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.05% | 21.95% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 497 | 42.45% | 57.55% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 44.78% | 55.22% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405970260 | T->C | LOC_Os04g10990(LOC_Os04g10990.1) | Non-Synonymous SNP |