Detailed information of SNP:
|
SNP ID:
sf0405970566(Gbrowse)
Chromosome: chr04 Position: 5970566 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.67% | 22.33% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 496 | 42.34% | 57.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 44.61% | 55.39% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405970566 | A->G | LOC_Os04g10990(LOC_Os04g10990.1) | INTRON |