Detailed information of SNP:
|
SNP ID:
sf0405975700(Gbrowse)
Chromosome: chr04 Position: 5975700 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1301 | 78.40% | 21.60% |
| All Indica | 754 | 87.27% | 12.73% |
| All Japonica | 442 | 68.10% | 31.90% |
| Aus | 54 | 55.56% | 44.44% |
| Indica I | 353 | 89.52% | 10.48% |
| Indica II | 204 | 93.14% | 6.86% |
| Indica Intermediate | 197 | 77.16% | 22.84% |
| Temperate Japonica | 297 | 64.65% | 35.35% |
| Tropical Japonica | 84 | 61.90% | 38.10% |
| Japonica Intermediate | 61 | 93.44% | 6.56% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405975700 | A->G | INTERGENIC | None |