Detailed information of SNP:



SNP ID: sf0405975700(Gbrowse)

Chromosome: chr04

Position: 5975700
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1301 78.40% 21.60%
All Indica754 87.27% 12.73%
All Japonica442 68.10% 31.90%
Aus54 55.56% 44.44%
Indica I353 89.52% 10.48%
Indica II204 93.14% 6.86%
Indica Intermediate197 77.16% 22.84%
Temperate Japonica297 64.65% 35.35%
Tropical Japonica84 61.90% 38.10%
Japonica Intermediate61 93.44% 6.56%
Group VI/Aromatic13 30.77% 69.23%
Intermediate38 71.05% 28.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0405975700 A->G INTERGENIC None