Detailed information of SNP:
|
SNP ID:
sf0405985581(Gbrowse)
Chromosome: chr04 Position: 5985581 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.00% | 47.00% |
| All Indica | 799 | 22.65% | 77.35% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 18.13% | 81.87% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405985581 | T->G | LOC_Os04g11040(LOC_Os04g11040.1) | UTR_3_PRIME |