Detailed information of SNP:
|
SNP ID:
sf0405988755(Gbrowse)
Chromosome: chr04 Position: 5988755 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.31% | 46.69% |
| All Indica | 799 | 22.78% | 77.22% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405988755 | A->T | INTERGENIC | None |