Detailed information of SNP:
|
SNP ID:
sf0406002957(Gbrowse)
Chromosome: chr04 Position: 6002957 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 89.41% | 10.59% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 334 | 93.11% | 6.89% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406002957 | A->G | LOC_Os04g11050(LOC_Os04g11050.1) | INTRON |