Detailed information of SNP:
|
SNP ID:
sf0406005712(Gbrowse)
Chromosome: chr04 Position: 6005712 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.49% | 46.51% |
| All Indica | 799 | 55.57% | 44.43% |
| All Japonica | 497 | 59.76% | 40.24% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 75.20% | 24.80% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406005712 | G->T | INTERGENIC | None |