Detailed information of SNP:
|
SNP ID:
sf0406020097(Gbrowse)
Chromosome: chr04 Position: 6020097 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 53.89% | 46.11% |
| All Indica | 794 | 55.67% | 44.33% |
| All Japonica | 497 | 59.96% | 40.04% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 74.73% | 25.27% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 209 | 29.19% | 70.81% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406020097 | A->G | INTERGENIC | None |