Detailed information of SNP:
|
SNP ID:
sf0406033228(Gbrowse)
Chromosome: chr04 Position: 6033228 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 96.43% | 3.57% |
| All Indica | 782 | 93.86% | 6.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 94.85% | 5.15% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 201 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406033228 | C->T | LOC_Os04g11090(LOC_Os04g11090.1) | Non-Synonymous SNP |