Detailed information of SNP:
|
SNP ID:
sf0406033816(Gbrowse)
Chromosome: chr04 Position: 6033816 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.62% | 48.38% |
| All Indica | 798 | 56.27% | 43.73% |
| All Japonica | 497 | 53.12% | 46.88% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 212 | 48.11% | 51.89% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406033816 | A->G | INTERGENIC | None |