Detailed information of SNP:
|
SNP ID:
sf0406033922(Gbrowse)
Chromosome: chr04 Position: 6033922 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 78.51% | 21.49% |
| All Indica | 769 | 87.13% | 12.87% |
| All Japonica | 486 | 69.75% | 30.25% |
| Aus | 64 | 53.12% | 46.88% |
| Indica I | 364 | 89.01% | 10.99% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 196 | 77.55% | 22.45% |
| Temperate Japonica | 326 | 69.33% | 30.67% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406033922 | T->C | INTERGENIC | None |