Detailed information of SNP:
|
SNP ID:
sf0406034309(Gbrowse)
Chromosome: chr04 Position: 6034309 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 92.63% | 7.37% |
| All Indica | 791 | 89.13% | 10.87% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406034309 | G->A | INTERGENIC | None |