Detailed information of SNP:
|
SNP ID:
sf0406035474(Gbrowse)
Chromosome: chr04 Position: 6035474 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.09% | 48.91% |
| All Indica | 799 | 51.44% | 48.56% |
| All Japonica | 497 | 41.45% | 58.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 25.07% | 74.93% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406035474 | A->C | INTERGENIC | None |