Detailed information of SNP:
|
SNP ID:
sf0406038460(Gbrowse)
Chromosome: chr04 Position: 6038460 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1174 | 97.02% | 2.98% |
| All Indica | 674 | 99.26% | 0.74% |
| All Japonica | 384 | 92.71% | 7.29% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 281 | 99.29% | 0.71% |
| Indica II | 199 | 98.49% | 1.51% |
| Indica Intermediate | 194 | 100.00% | 0.00% |
| Temperate Japonica | 235 | 92.34% | 7.66% |
| Tropical Japonica | 84 | 95.24% | 4.76% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406038460 | C->T | INTERGENIC | None |