Detailed information of SNP:
|
SNP ID:
sf0406045573(Gbrowse)
Chromosome: chr04 Position: 6045573 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.10% | 18.90% |
| All Indica | 798 | 81.83% | 18.17% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406045573 | C->A | INTERGENIC | None |