Detailed information of SNP:
|
SNP ID:
sf0406052078(Gbrowse)
Chromosome: chr04 Position: 6052078 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 85.44% | 14.56% |
| All Indica | 784 | 86.35% | 13.65% |
| All Japonica | 493 | 87.83% | 12.17% |
| Aus | 64 | 67.19% | 32.81% |
| Indica I | 370 | 87.30% | 12.70% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 204 | 77.94% | 22.06% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406052078 | T->C | INTERGENIC | None |