Detailed information of SNP:
|
SNP ID:
sf0406052186(Gbrowse)
Chromosome: chr04 Position: 6052186 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 70.13% | 29.87% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 496 | 18.95% | 81.05% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 11.98% | 88.02% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406052186 | A->G | INTERGENIC | None |