Detailed information of SNP:
|
SNP ID:
sf0406052233(Gbrowse)
Chromosome: chr04 Position: 6052233 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 73.32% | 26.68% |
| All Indica | 798 | 66.92% | 33.08% |
| All Japonica | 496 | 86.49% | 13.51% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 75.94% | 24.06% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406052233 | A->G | INTERGENIC | None |