Detailed information of SNP:
|
SNP ID:
sf0406052719(Gbrowse)
Chromosome: chr04 Position: 6052719 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 81.93% | 18.07% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 495 | 86.46% | 13.54% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 92 | 53.26% | 46.74% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406052719 | C->G | INTERGENIC | None |