Detailed information of SNP:
|
SNP ID:
sf0406056089(Gbrowse)
Chromosome: chr04 Position: 6056089 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 80.97% | 19.03% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406056089 | A->G | INTERGENIC | None |