Detailed information of SNP:
|
SNP ID:
sf0406058315(Gbrowse)
Chromosome: chr04 Position: 6058315 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 89.01% | 10.99% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 481 | 69.44% | 30.56% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 325 | 60.92% | 39.08% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 65 | 75.38% | 24.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406058315 | A->T | LOC_Os04g11150(LOC_Os04g11150.1) | INTRON |