Detailed information of SNP:
|
SNP ID:
sf0406058471(Gbrowse)
Chromosome: chr04 Position: 6058471 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 93.79% | 6.21% |
| All Indica | 797 | 91.09% | 8.91% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406058471 | C->T | LOC_Os04g11150(LOC_Os04g11150.1) | Non-Synonymous SNP |