Detailed information of SNP:
|
SNP ID:
sf0406061240(Gbrowse)
Chromosome: chr04 Position: 6061240 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 63.35% | 36.65% |
| All Indica | 788 | 92.13% | 7.87% |
| All Japonica | 495 | 12.73% | 87.27% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 91.28% | 8.72% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406061240 | A->G | INTERGENIC | None |