Detailed information of SNP:
|
SNP ID:
sf0406135387(Gbrowse)
Chromosome: chr04 Position: 6135387 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 95.11% | 4.89% |
| All Indica | 772 | 92.10% | 7.90% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 372 | 91.13% | 8.87% |
| Indica II | 194 | 91.24% | 8.76% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406135387 | A->G | LOC_Os04g11230(LOC_Os04g11230.1) | INTRON |