Detailed information of SNP:
|
SNP ID:
sf0406142906(Gbrowse)
Chromosome: chr04 Position: 6142906 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 64.46% | 35.54% |
| All Indica | 784 | 45.03% | 54.97% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 368 | 21.20% | 78.80% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 205 | 57.56% | 42.44% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406142906 | G->A | LOC_Os04g11240(LOC_Os04g11240.1) | Non-Synonymous SNP |