Detailed information of SNP:
|
SNP ID:
sf0406145463(Gbrowse)
Chromosome: chr04 Position: 6145463 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 97.24% | 2.76% |
| All Indica | 761 | 95.14% | 4.86% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 93.77% | 6.23% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 200 | 95.50% | 4.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406145463 | T->C | INTERGENIC | None |