Detailed information of SNP:
|
SNP ID:
sf0406145464(Gbrowse)
Chromosome: chr04 Position: 6145464 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 97.39% | 2.61% |
| All Indica | 762 | 95.28% | 4.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 94.05% | 5.95% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 201 | 95.52% | 4.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406145464 | G->A | INTERGENIC | None |