Detailed information of SNP:
|
SNP ID:
sf0406161549(Gbrowse)
Chromosome: chr04 Position: 6161549 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 57.95% | 42.05% |
| All Indica | 785 | 87.52% | 12.48% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 202 | 74.26% | 25.74% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406161549 | T->A | LOC_Os04g11290(LOC_Os04g11290.1) | Non-Synonymous SNP |