Detailed information of SNP:
|
SNP ID:
sf0406165835(Gbrowse)
Chromosome: chr04 Position: 6165835 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 59.66% | 40.34% |
| All Indica | 786 | 89.82% | 10.18% |
| All Japonica | 496 | 6.05% | 93.95% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 94.34% | 5.66% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 205 | 79.51% | 20.49% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406165835 | C->T | LOC_Os04g11300(LOC_Os04g11300.1) | Non-Synonymous SNP |